Group 1 came up with this message:
HI STANLEY I LIKE PIZZA THIS CODE IS EASY.
They encoded their message with the classic Caesar Cipher (where each letter is shifted 3, so instead of A we write D, instead of B we write E, and so on).  The coded message was:
KL VWDQOHB L OLNH SLCCD WKLV FRGH LV HDVB.
Group 2 broke the code by recognizing that "HI" is a very good word for starting a message, and then seeing that the whole alphabet had been shifted by three characters.
Then Group 2 came up with a message:
 HELLO PEOPLE OF EARTH, 
THE SKELETAL DEVIL HAS COME OUT OF THE EARTH, FOR I PROSPERO THE MAGICIAN HAVE LET HIM OUT!  FOR LUNCH.  
P.S.  HE WANTS TO EAT YOU ALL.
They encoded this by a random letter substitution, so the coded message was
WEUUI NEINUE IX EGHVW,
VWE YLEUEVGU TERBU WGY QIDE IFV IX VWE EGHVW XIH B NHIYNEHI VWE DGPBQBGZ WGRE UEV WBD IFV XIH UFZQW NY WE KGZVY VI EGV OIF GUU!
Group 1 broke the code using some useful properties of the English language.  They knew B should mean either A or I, since those are the only valid one-letter words in English.  They also figured out that VWE was THE, since THE is one of the most commonly occurring three-letter words in English.  Since the alphabet was all mixed up instead of shifted, this code was pretty tricky to break. 
Along the way, I had the kids pick storybooks they were reading and count how many times different letters occurred.  This gave everyone a feeling for how common different letters are.  For example, T and E show up all the time, but J and Z and Q hardly show up at all.  This can be useful in cracking a code - the most frequently occurring symbol probably doesn't mean Z, unless the message is about pizza!
 

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